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  3. tahoebio/EmeraldBay

tahoebio

EmeraldBay

Emerald Bay — single-cell perturbation dataset of 1.8M+ transcriptomic profiles spanning 52 cell lines × 91 drug treatments (plus combinations), generated on Tahoe’s MOSAIC high-throughput platform with paired transcriptional and drug-phenotype readouts over a five-day culture.

Original source
Rows
1,900,438
On disk
54 GB
Downloads
1.3k

Last 30 days

Updated
Jun 5

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Column statistics

How the columns are distributed

Over 189,488 rows of expression_data/train

BARCODE_SUB_LIB_ID

string_text
min
16
median
16
mean
16
max
16

cell_line

string_label
  • CVCL_054617%
  • CVCL_1098

Splits

5
  • expression_data/train
  • cell_line_metadata/train
  • drug_metadata/train
  • gene_metadata/train
  • summary_statistics/train

Query support

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Provenance

Licence
cc-by-4.0
Likes
13
6%
  • CVCL_04596%
  • drug

    string_label
    • DMSO_TF4%
    • Tucatinib+Trastuzumab4%
    • GDC-60364%

    drugname_drugconc

    string_label
    • [('DMSO_TF', 0.0, 'uM')]4%
    • [('Sotorasib', 0.005, 'uM'), ('LY3200882', 0.5, 'uM')]2%
    • [('Cetuximab', 0.068596, 'uM'), ('Adagrasib', 0.005, 'uM')]2%

    expressions

    list
    min
    263
    median
    1,325
    mean
    1672.98
    max
    6,846

    genes

    list
    min
    263
    median
    1,325
    mean
    1672.98
    max
    6,846

    sample

    string_label
    • smp_8502%
    • smp_8422%
    • smp_8042%

    Fields

    BiologyMedicineChemistryGenomics