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Find the model or dataset for the question you have.

Ask in plain language and we will work out where the answer lives — or filter the index yourself. Almost everything here runs on our servers, from this page, with no setup.

Models
297
Datasets
245
Organisations
128

Labs, institutes and companies

Ready to run
24

Including 6 that run free and instantly

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Things that work

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22 entries in Biotechnology

Showing 22 of 22

Ready to run

3
ReadyModel

ProGen2

Salesforce Research

Autoregressive protein generation up to 6.4B parameters, with an antibody variant.

sequence generation
ReadyModel

ProteinMPNN

Baker Lab

Inverse folding: given a backbone, design sequences that actually fold onto it.

inverse folding
ReadyModel

RFDiffusion

Baker Lab / Institute for Protein Design

De novo backbone generation by denoising diffusion — the binder-design workhorse.

backbone generation

Everything else indexed

19
AbLang2Oxford Protein Informatics GroupAntibody-specific language model trained on the Observed Antibody Space.sequence embeddingOn demand
ANARCIOxford Protein Informatics GroupAntibody numbering and region annotation — Chothia, IMGT, Kabat.annotationOn demand
AntiFoldHummer et al., DTUInverse folding specialised for antibody backbones and CDR loops.inverse foldingOn demand
ESM-IF1Meta FAIRLanguage-model-informed inverse folding — an alternative view to ProteinMPNN.inverse foldingOn demand
ImmuneBuilderOxford Protein Informatics GroupSub-second structure prediction for antibodies, nanobodies and TCRs.structure predictionOn demand
MAMMAL solubilityIBM ResearchSolubility prediction — the cheapest developability filter you can run.developabilityOn demand
SapiensAstraZeneca / Prihoda et al.Germline-guided antibody humanization, validated on clinical-stage molecules.humanizationOn demand
SaProtSu et al., Westlake UniversityStructure-aware protein LM using combined sequence + structure tokens.sequence embeddingOn demand
BindCraftOvchinnikov Lab / Baker LabAF2-guided hallucination that co-folds target and binder — ~10 screens to a hit.binder designBrowse
DPLM-2Nanjing University / ByteDanceDiffusion protein language model generating sequence and structure jointly.sequence generationBrowse
EVOLVEproHarvard / Broad InstituteFew-shot active learning for directed evolution — 24 mutants per round.directed evolutionBrowse
GDPa1ginkgo-datapointsAntibody developability dataset with biophysical assay data for 242 antibodies across 9 assays.Antibody DevelopabilityBrowse
GDPx1ginkgo-datapointsDRUG-seq functional genomics dataset with chemical perturbation experiments in A549 cells.Functional GenomicsBrowse
GDPx2ginkgo-datapointsDRUG-seq transcriptomic profiling across 4 primary human cell types with 85 compounds.Functional GenomicsBrowse
GDPx3ginkgo-datapointsHigh-content Cell Painting imaging dataset for AI/ML model training in drug discovery.Cell ImagingBrowse
GDPx4ginkgo-datapointsDRUG-seq transcriptomic profiling in engineered HEK293 cells with inducible gene overexpression, enabling systematic study of gene-drug interactions.Functional GenomicsBrowse
IgFoldRuffolo et al., Johns HopkinsAntibody structure prediction ~1000× faster than AlphaFold2.structure predictionBrowse
img_virus_plasmidwanglabCombined IMG/VR (uncultivated virus genomes) and IMG/PR (plasmids from genomes and metagenomes) catalog with rich functional, taxonomic, and ecological metadata.Microbial GenomicsBrowse
ParagraphDeane Lab / OxfordParatope and epitope prediction for humanization and immunogenicity work.epitope predictionBrowse